In the last of July’s posts focussing on PhD tips, I thought I should probably spend some time focusing on research questions and creating an environment that supports having ideas. This sounds like the simplest thing, but I think it’s often an undisclosed struggle for many and a source of silent pressure that might benefit from being acknowledged, especially when you’re just starting out.

I think this area probably ties into who you are as a person. I, for instance, have never found ideas to be a particular issue, but I think that’s because I’m by nature a starter and not a finisher. I often have too many ideas in my head to be efficient in any form of implementation. You may, however, be the other end of the scale, great at implementation, but struggle at the start with staring at a blank sheet of paper. Both of these traits have their unique challenges when it comes to finding ideas and taking them through to realisation. As with so much else, knowing how you interact with the world will probably help in finding the best pathway to success.

So whether you are being over or underwhelmed by inspiration and ideas, I hope this week’s post may help you navigate some of the challenges of finding your next research question.

Science is a creative process

As Scientific Director of the Nosocomial Project, I’ve spent a far amount of time now working with people who are based in what is acknowledged as a creative industry. I think one of the things that has struck me is that there is more that is similar in some of the processes within the Arts and Science than is different. Although science is often seen from the outside as a process driven area, at its very heart, and to be successful, it is actually based around ideas, questions, and developing concepts. Both areas require us to be able to ask new questions and sometimes see the world or challenges in a different way to those who’ve come before.

Creativity in itself is a process. It’s something that requires the identification of time in order to allow ideas to be inspired, developed and reflected on. This is true whether you are a natural ideas person, who needs this time to be able to sort and feel less overwhelmed, or someone who needs space to allow the ideas themselves for formulate.

Now, I’m not going to say good ideas because I believe you don’t know whether an idea is good or bad until much further down the line, ideas aren’t weighted at the start, they are just ideas. Sometimes, the most far out one’s turn out to be best and sometimes the most solid appearing ones turn out to be a waste of time. Which brings me to thought number one: inspiration shouldn’t involve a value judgement. Being open to ideas requires time and occasionally bravery, but the shifting process, where you consider whether an idea has legs, comes later.

Make time for inspiration

One of the biggest challenges I’ve found with the way I see this and even when I’ve been writing this blog, is the temptation to describe and discuss productive time. The thing is, the creation of time for ideas is key but often doesn’t feel productive. I think this is because the very word productive links the time to a value judgement about the ideas produced, whereas creating the time for ideas is where the value lies, whether those ideas end up being genius or merely a stage in process.

This is one of the challenges with science being a process driven environment, with a focus on outputs. If we are not ‘doing science’ time is considered to be wasted. One of the things I try to encourage in my students is that a walk in the park just letting your mind wonder, or staring at the rain through a window to free your mind, is sometimes the most valuable time you will spend during your PhD. Especially if you’ve come up against a tricky problem. Staring at something head on can only get you so far.

Sometimes it’s hard to be passive, I’m really not that great at just ‘being’. If you are like me therefore you may decide a kitchen disco is the best way to free your mind or to go for a run. Finding a way that allows you to distract your mind to enable you to see things in a different way, whatever way that works for you, is the main thing.

Spend time reading and reflecting

Occasionally, the pressure to solve things or come up with ideas can feel a lot like writers’ blocks. Staring at empty screens, lab books, or grant templates. Although space often helps, sometimes you need a kick-off point. I find reading (or going to listen to people speak) can often be helpful at this point. I’m not talking about reading for critique here but reading for inspiration.

Often, when we are reading papers etc we are reading it to evaluate how good it is or to support technical understanding. I think reading for inspiration is probably a different skill. It’s the opposite of the trying to focus on the details we normally do. It’s reading and almost actively listening and recognising those little side tracking ‘what if’ thoughts that we would often try to ignore.

When reading for inspiration, you may also want to try different content that you would normally engage with. You might want to read about your subject from a different disciplines perspective, for instance, infection control but from a human factors perspective. If you are working in a translational area, you might want to read about another use of the technique that isn’t within your specialism or some fundamental science papers. You may even want to read articles and blog posts from patients or advocacy groups in order to get a different perspective. The main thing is to be cognisant in your approach and be open to going down some mental rabbit holes to see where they lead.

Sometimes, you need to act on your thoughts

Once you’ve done your reading for inspiration and have your thoughts the next step is deciding what to do with them. This requires some form of action, often doing some further reading or sitting down to grow that thought, and specifically reflect and write about how that germ of an idea might grown into a more fully formed question or piece of work.

This step is not always easy, but I think it is the part that most of us are more used to as scientists. That said, there are some days where my mind is a hell to me, and I think if it was visualised, it would just be a cloud of buzzing flies. On days like this, I write. I write blog posts. I write postit notes. I scribble notes in books. Writing things down, even if not to do with my research thoughts, creates a little space so that I can see the wood for the trees. It empties my mind on specific topics so I can gain clarity on other things and do the development work needed.

If being overwhelmed isn’t your issue, this is probably the time to hit the reading for research portion of development. This is where you would read more closely around the idea itself and start to see what others have done, undertake your gap analysis, and begin to think about the practicalities of undertaking the work.

Be prepared for failure

A wise person once told me that ‘science is 80% failure’ and that ‘the earlier I got used to that concept, the easier my journey would be’. As you hit the evaluation phase of idea development, you need to be OK with throwing out or needing to redefine a bunch of the thoughts you had in the earlier phases. This is the phase where you take your researched concept and try to change it into a fully formed research question or practical experiment. It is also the phase where you find out whether your idea truly translates into something workable.

Although this part can feel painful, it’s actually the core part of being a scientist and where a whole heap of the learning that occurs. The more you do it the better you get at spotting a good idea in the earlier stages, and actually the easier it is to be inspired and have ideas as it’s a skill that needs to be developed like anything else.

Sometimes it’s better to just start

Because the question develop part can be painful it’s something that, if you are like me, you may procrastinate over. You may just want to sit in the lovely inspiration phase where all your thoughts are still possibilities. The truth of the matter is that it is easy to justify staying in the thinking phase as it can be hard to know when you’ve done enough thinking and prep to move an idea to the next stage. However, if you never try moving from an idea to a reality you will also never succeed, and so sometimes we all need to pull off the psychological band-aid and just try it out. There are also times when you just frankly need to stop being scared and JFDI it to see where it goes.

Appreciate the role of translational reasearch

In my kind of research, which is clinical as part of Infection Prevention and Control, I have found something else that sometimes helps. Sometimes it can be easy to become hyper focussed on scientific issues and challenges. On days when I’m stuck and just don’t feel a way forward I play a little mental game with myself. Now, it’s no secret that I spent a bunch of time in hospital and experiencing healthcare as a child, and I now work in paediatrics. I therefore run myself through different scenarios as a paediatric patient visiting or being admitted to hospital. Scenarios with different incidences, organisms, and experiences. Sometimes inspired by real patient challenges I’ve been involved with, sometimes entirely theoretical. I then try to use that process to better understand what might be important to me, what the significant moments may have been and where we could do better. I find that running this from a patient centred viewpoint can provide me fresh perspectives, which in turn enables me to have better ideas. If you don’t work an environment where you meet patients, but your work is on a specific organism for example, maybe reach out to an advocacy or similar group, to help you also get a fresh perspective, or even just speak to family and friends about their lived experience.

Don’t worry too much about everyone else

I wanted to finish by talking about something that has been a bit of a theme in my academic life and the main thing I have learnt to manage it. That is the fear or reality of ideas being taken by either those more senior or those with more power/access. I don’t think I can say with any good conscience that this doesn’t happen, I have myself previously come in to access my desk to find a senior PI searching it for my lab books containing data they weren’t working with me on.

The thing I’ve learnt is not to hold onto any one thing too tightly. This isn’t justifying the fact that this behaviour exists, it’s just the way I have learnt to maintain my mental health and wellbeing. There are times when you need to defend and maintain ownership of concepts, especially if something is key to your PhD. For the most part, however, I’ve discovered that I will always have other ideas, and there will always be different ways I can spin the original concept. Some of my best work has actually come because of the external push due to someone published some of our shared work as a solo author instead of together. It forced me to take the next thought step and develop more than I may have otherwise.

So I’d like to finish on the note that no matter where you are on your scientific journey, trust yourself. Trust your instincts. Trusts you will always have another idea. Trust that you will always be able to come up with a plan B. Trust that there are people out there who will want to help and support. Sometimes, developing and maintaining that trust is our biggest challenge as individuals working in science, but it is worth doing the work as it will provide long-term dividends both in and out of work.

All opinions in this blog are my own

If you would like more tips and advice linked to your PhD journey then the first every Girlymicrobiologist book is here to help!

This book goes beyond the typical academic handbook, acknowledging the unique challenges and triumphs faced by PhD students and offering relatable, real-world advice to help you:

• Master the art of effective research and time management to stay organized and on track.
• Build a supportive network of peers, mentors, and supervisors to overcome challenges and foster collaboration.
• Maintain a healthy work-life balance by prioritizing self-care and avoiding burnout.
• Embrace the unexpected and view setbacks as opportunities for growth and innovation.
• Navigate the complexities of academia with confidence and build a strong professional network

This book starts at the very beginning, with why you might want to do a PhD, how you might decide what route to PhD is right for you, and what a successful application might look like.

It then takes you through your PhD journey, year by year, with tips about how to approach and succeed during significant moments, such as attending your first conference, or writing your first academic paper.

Finally, you will discover what other skills you need to develop during your PhD to give you the best route to success after your viva. All of this supported by links to activities on The Girlymicrobiologist blog, to help you with practical exercises in order to apply what you have learned.

Take a look on Amazon to find out more

Dear gentle reader, let me tell you a tale, a tale of a naive PhD student and of her nemesis, the notorious villain known as The Thesis. Grab a comforting beverage, as this tale is filled with both thrills and peril for your delectation.

The final 12 months of my PhD were tricky. I had simultaneously signed up to do FRCPath and a PGCert in education on top of thesis writing, which in hindsight was beyond stupid, but made a strange sense at the time. So I was writing not only a thesis, but a Fellowship of the Higher Education Academy (FHEA) portfolio as well, and trying to submit my thesis a year early in order to allow revision time for my final clinical exams. I’d also run into supervision challenges as my primaries vision of my thesis, both in the required level of content and how that content was presented, was different to mine.  Needless to say, it was a bit a grim time.

Fast forward to my viva, I have submitted my thesis without supervisor sign off, and to be honest, there was a good chance I was entirely wrong and had set myself up for failure. The viva had lasted an hour, including having a cup of tea with my examiners. This is either a really good or hella bad sign, right? I’m standing outside the room whilst they deliberate, and I am seriously considering just running away as I’m in the midst of a full-on panic with my rational brain having entirely left the party. Suddenly, I hear them laughing, and I know that I am doomed. I’m about to just leave when the door opens, and they are standing there, staring at me expectantly. I have no choice, I enter the room to hear my fate.

The first words out of their mouths are “can you take a seat, we have some bad news for you and it’s probably better that you’re seated whilst we go through it”. At this point, I almost vomit, and it takes everything I have not to cry. I had been wrong. My primary was right, I’m a disaster, what was I thinking. I sit, and all I can think is that I just need to get out of this room and back to Mr Girlymicro, and the sooner I get it over with, the better. They look at each other and then at me, the external says “we have to ask for some changes and I’m afraid that they are substantial” they look at each other again pausing for what felt like forever before continuing “we need you to add an extra page of conclusions and it MUST NOT be more than 350 words”. They burst into laughter and shake each others hands and then mine. I stare at them blankly and ask them to repeat. When they are done laughing with each other they say, “also, when you have PhD students NEVER show them your thesis, show them a chapter of your thesis, that’s what a thesis should look like”. They then dump the examiner copies of my thesis into my hands to carry from the room so I can experience the weight….still smiling at each other, and the whole thing is over.

I therefore include my PhD thesis below not as an example of the thesis you should write, but perhaps as an example that is so long you might get away with a short viva and the examiners saying they never want to see it again. I also thought that this week I might include some of the lessons that that 12 month period taught me, as well as what I have learnt since from being both a supervisor and examiner.

Your thesis should tell a story, so be aware of what serves the tale

You may have a much better vision for your thesis than I did for mine, but whatever that vision is, it needs to involve telling your reader/examiner a coherent story. You may have done 20 small bits of work that you did because they were individually interesting, but when it comes to your thesis it’s time to put those together into chapters that read like you’d planned all of them together and a tale that hold logical progression from 1 chapter to another.

There are plenty of different ways to do this, and you can take any approach that makes sense for your work, but there are a few things to consider:

• Think about having a thesis structure diagram so how your work hangs together doesn’t have to be intuited by your examiners, but is clearly laid out
• Think carefully about the number of chapters and chapter order to ensure they are supporting the overall tale you are telling, be that of scientific discovery or adversity over failure
• Try to embed being clear about your why and impact throughout, especially if you are doing a clinical PhD. Be conscious about picking the points where you can make your ‘so what’ clear
• Rationalise what you should include to serve the story you are telling. You do not need to include every single thing you’ve done, in fact it could make it harder to read

Think about what purpose your thesis will serve

This one may sound a little weird, as surely everyone’s thesis serves the same purpose, to convey the work done during the PhD and provide a route for assessment. That is true. However, in terms of longevity, some thesis serve a different purpose. For me, as my research area is also in my area of work, my thesis is a manual I still go back to to remind myself of how to do pieces of work, such as decontamination validations. This won’t be true for some people. Some people write a thesis that will never be read again,  and so the thesis is written to please their examiners as a primary function. Mine, as you’ve read, was less pleasing to my examiners, but acts as a reference text for me to this day, and so fulfils the purpose that I had in mind when I wrote it.

Know your process

We all work differently, but the more you understand how you work the more you will reduce your stress around thesis writing. Are you a, write it up as I go kind of person? Are you a, I need to have all the info to decide what my story it before I start gal?

My process was that, because I was still working clinically part time, I took a month for each chapter of my thesis.  Week 1 I undertook a literature search and collated all the relevant papers, read them and made bullet points, week 2 I created figures and started writing, week 3 I finished writing the chapter,  week 4 I edited and sent it out for comment. Repeat for 5 months, and I was pretty much done.

My PhD students are far superior to me, they are well read, keep spreadsheets of notes, as well as writing up as they go along. As I was balancing responsive IPC and my PhD that just never worked out for me. There’s no point in pretending to be in a category that you aren’t or wishing it were different. Discover how you work, acknowledge it, and then find a practical framework where you can use it to your advantage.

Do your research

Now we are getting the nitty gritty of what I had wished I had known before I started, and this part all comes down to research. There are a few things which I wish I’d invested more time in before I even started writing my thesis as they would have removed a bunch of the wall contemplation and anxiety, as well as saving a heap of time:

• There are lots of different ways to structure a thesis, and as long as you obey the broad university rules, the detail of how you do it is up to you. Spend time looking at other people’s, as the best flattery is to borrow, to identify the bits you like, the bits you don’t like, and find inspiration for what works for your way of thinking. All of the UCL ones are available online, and I’m sure many other universities are the same
• Learn how to make/edit writing templates, or find ones that are pre-done. This may be the old person in me but I just didn’t know enough about how to set up word or other document templates to auto generate lists. My poor friend came in at the end and spent 8 hours correcting my thesis so all of it would work and I didn’t have to manually change my indexing
• Find reference software that you like and spend time making sure your inputs are high quality and not missing details. The last thing you want to do for hours pre submission is to correct hundreds of incomplete references as you didn’t check on upload
• Know your university submission rules inside and out. You will hopefully never be in the position I was in, where I had to know what would happen if I submitted without supervisor sign off, but even so it is worth familiarising yourself. These rules will help you choose examiners, understand time scales, and be sure your thesis structure is acceptable. Best always to be prepared.

More is not always better

As much as my thesis was long at 95,000 words plus references, for a short time it looked like it might be even longer and I was going to struggle to keep it under the 100,000 word limit. I had an entire other data chapter to put in and just had a lot of self doubt about dropping it as I thought it was the ‘lazy’ option (BTW I often struggle as I think of myself as a pretty lazy person and so find it difficult to self check). The thing is, it didn’t serve my story, and I would have been adding it in just to show how much work I’d done. That really isn’t the purpose of a thesis so in the end I was persuaded to edit and drop it out. It was such a good call but required the help and support of others. Making sure that you are either able to do a brutal edit yourself, or can call in the support of someone else who can, will make your thesis so much better.

Find a critical friend

Which brings me onto having critical friends. These are the people you like and trust to tell you the things you may not want to hear but will make your work better. You need to find a couple of these who will read though and discuss your work with you, preferably ones who will also help edit as they go. You need people doing this who understand what you are doing and you have pre-existing relationship capital with, so it won’t destroy your friendship when they point out that something isn’t making sense and you haven’t slept for a week. Pre build these relationships ahead of time during your PhD, nurture them, they will stand you in good sted, not just for your thesis but for life.

Take advice, but have the courage of your convictions

Writing a thesis is like planning a wedding, once you mention it everyone will just start offering you advice. I understand the irony of this statement in the context of this blog post, but it’s true, and honestly no one is forcing you to read these words 😉 All of this advice can become very challenging, as the likelihood is that some, if not all of it, will end up being conflicting, especially if you have too much of it. It’s one of the reasons I suggest having just a couple of good critical friends, obviously in addition to your supervisors.

I would also suggest reviewing all of the advice you receive on the basis of three things before you take it onboard:

• The level of knowledge and experience of the person giving it you in the specific task you are doing – accepting a history PhD’s thoughts on your genomic thesis may not be that helpful, although they may inspire a new approach that could work
• Understand the drivers behind the advice – some people will give you advice just because they feel they have to contribute, and some people will genuinely want to help. Not all advice is benign, however, and so understanding the drivers behind it is key
• Evaluate whether the suggestion works for the way your mind works – some people will have really good suggestions that don’t work for the way you process the world or your vision – ideas are like dresses, the same ones don’t fit everyone

Be prepared to find your own way forward as you are the person who needs to write it. Keep enough of an open mind to accept a challenge that will lead to improvement, but don’t try to incorporate everything, otherwise you will lose your voice at the centre of it.

Be prepared for revisions

It’s so tempting to think that if you put enough time into your first draft that you will be saving time further down the line. The problem is that that is not always true. Sometimes, spending a lot of time on your first draft just means you go further down an inappropriate rabbit hole. You can lose not only lose a lot of time when you have redo it, but it can also become challenging psychologically to make the change. Think me and the Adenovirus chapter, unnecessary agonising occurred which took up emotional band width and time. In the initial structural work up phase, it is probably worth therefore getting early commentary before you are too attached to a specific approach, so that if you have to pivot you can do more easily.

The other thing to note is that it will always take you waaaay longer to edit than you anticipated. For most of us, we have never had to work on a document this long, and so don’t generally have good projection skills for the length of time it will take. You will also want so many more versions and edits of your thesis than of any other document you’ve done, as you won’t want all those spelling mistakes coming back as corrections, and I for one didn’t realising I would be on ‘final version’ 20 something.

Finally, your supervisors and others reading and editing it will take much longer to get it back to you than other things you’ve sent on because they also have to find larger chunks of time than they normally would. It is also worth knowing ahead of time how many times your supervisors are prepared to look at it, so that you make the most of the opportunities you have and pick the key moments for input. Make sure whatever time you think you’ll need for editing is probably tripled on your project plan.

Remember to take time to decompress

I write this as someone who quite literally lost her hair and developed a bald patch during her PhD, make sure you take breaks. Your brain is processing vast amounts of information during your writing up period and it is easy to become laser focussed. That’s good but it can also be trouble. You need to walk away from a piece of work to see the problems and the gaps within it. From a basic point of view, you will get to the point where you read what you think is there rather than what it actually is there, and that is no good to you in the long run.

So, from someone who didn’t and still lives with the physical consequences, make sure that both your mind and body are able to do what it needed of them by ensuring you rest. Sometimes, all you’ll need is a day in the lab away from the laptop, but some days you will need to have a long soak or a walk in the woods to enable your mind to see what’s right in front of it when you return. Also, I highly recommend booking a holiday between submission and your viva date so you walk into that viva room in the best physical and mental shape you can.

Your thesis is YOUR thesis

Your thesis, like your PhD is one of the few times in your career where the work should be entirely yours, and at the end of the day you will be the person sat alone in a room to defend your choices. I’m not advocating ignoring your supervisors, they will have huge amounts of experience and it is always worth getting the benefit of what they have to say. If the crunch time happens however you can’t use the ‘my supervisor told me to’ defence when you are sat in that room and looking your examiners in the eye. Your work has to make sense to you and be presented in a way that you can walk someone else through and defend it, there’s a reason a viva is called a defence in the US. So, as much as it’s important to get the best possible advice, input and support, when it comes to being in that room you are alone, and so you have to own the decisions you’ve made and the work you’ve done. You will come out of that room all the more developed as a scientist because of it, and whatever happens you should be proud of what you’ve done.

In the end, this princess and general could have chosen to slaughter the villainous Thesis, but instead she adopted it and made it her friend. Now it serves her as a memory charm and library guardian for all the work that came before, and acts as a reminder for her to be kind to all those that are following in her footsteps.

All opinions in this blog are my own

If you would like more tips and advice linked to your PhD journey then the first every Girlymicrobiologist book is here to help!

This book goes beyond the typical academic handbook, acknowledging the unique challenges and triumphs faced by PhD students and offering relatable, real-world advice to help you:

• Master the art of effective research and time management to stay organized and on track.
• Build a supportive network of peers, mentors, and supervisors to overcome challenges and foster collaboration.
• Maintain a healthy work-life balance by prioritizing self-care and avoiding burnout.
• Embrace the unexpected and view setbacks as opportunities for growth and innovation.
• Navigate the complexities of academia with confidence and build a strong professional network

This book starts at the very beginning, with why you might want to do a PhD, how you might decide what route to PhD is right for you, and what a successful application might look like.

It then takes you through your PhD journey, year by year, with tips about how to approach and succeed during significant moments, such as attending your first conference, or writing your first academic paper.

Finally, you will discover what other skills you need to develop during your PhD to give you the best route to success after your viva. All of this supported by links to activities on The Girlymicrobiologist blog, to help you with practical exercises in order to apply what you have learned.

Take a look on Amazon to find out more